When you go to Fishermans warf there are some small sight seeing boats for around $10.00 I always wanted to ask if they would do a lighthouse trip to East Brother Yerba buena and Alcatraz. If you are there check it out and maybe they will do it for a couple extra bucks. Then report back to us with this info if they do. Take a morning ride to do Point reyes it is a must do. it is a long trip and if you are pressed for time you dont have to do the 310 steps and still get some nice shots from the top.
If you go to Montera check out the time because if I remeber you can only get in before 11a and after 5 Pm I think. They close the gates for guests it is a hostel. Very pretty there.